Basic Information
VIS ID
TVIS42000680
Fusion event
EBV-NAALADL2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
155925
Orient
-
Integrated sequence
CGCTGGCGTAGAAGTAGGCCTGCTGCCCAAACACGTTCACACACACGCTGGCCCCATCGGCCTTGCGCCGGCCCAGTAGCTTGATGACGATGCCACATGG| |CACCACATACCCCTGTTTATCCGATGGAATGACGGCGCATTTCTCGTGCGTGTACACCGTCTCGAGTATGTCGTAGACATGGAAGTCCAGAGGGCTTCCG
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
174360007/174642217 (Hg38)
End
174360007/174642217 (Hg38)
Orient
+
Location type
Intronic
Target gene
NAALADL2
Nearest miRNA
hsa-let-7g/Upstream/3535458; hsa-mir-1224/Downstream/727323;
Nearest TSS
ENST00000440867/Upstream/201230; ENST00000485853/Downstream/217063;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/200659, chr3-CpG: 133/Downstream/2554232
Upstream sequence
actcacattcctaacagcattattcacaacagccaggaggaggaagcaacccaactgtccatcaatggatggctagataaaatgcggtatatacatacaa
Downstream sequence
TTTccgggcacagtggctcacacctgtaatcccagcactttaggaggctgaagtgtgtggatcacttgaggtcaggaattcaagaccagcctggccaaca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate