Basic Information
VIS ID
TVIS42000681
Fusion event
EBV-LOC107986053 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
85035
Orient
+
Integrated sequence
GGTGGTTCAGCCAAGTCAGACTCCAGATGACCCAACGAAACAGTCCCGGCCACCGGAAACAGCTGCCCCACGCCAGTGGCCAATGCCCCTGCGACCTATC| |CCTATGCGCCCCTTGCGGATGCAGCCAATCCCATTTAATCATCCAGTGGGACCCACTCCCCATCAGACACCTCAAGTGGAAATAACACCATATAAGCCCA
Host Sequence
Chromosome
chr3
Cytoband
q26.32
Reference genome
GRCh37/hg19
Start
176946163/177228375 (Hg38)
End
176946163/177228375 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986053
Nearest miRNA
hsa-let-7g/Upstream/713224; hsa-mir-1224/Downstream/6658425;
Nearest TSS
ENST00000440867/Upstream/375; ENST00000425388/Downstream/66067;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/30309, chr3-CpG: 63/Downstream/1843142
Upstream sequence
aaagagaggagaatcaaatagacacaataaaaaatgataaaggggatatcatcactgatcccacagaaatataaactaccatcagagaacactataaaca
Downstream sequence
ccgagctagacacagagtgctgattggtgcgtttacaatcctccagctaggcacaaaagttgtccaagtccccaccagattagctagatacagagtgctg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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