Basic Information
VIS ID
TVIS42000683
Fusion event
EBV-LOC107986163 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
148952
Orient
-
Integrated sequence
TGGCCCCATACTCCCGCCATGCGACTGCTCGCCCCCTCCCAGGCCTCCCTGGTGAGCCCTTGCCGCTCCCCGCATTCCTGCTTTCGGCGCCCCTGCGGAT| |CCCGATGACAGCAGGCCTTTCCTTCCCCCGTTAATGAAAAGAATGACAGTGAGGTTGTGACAGAAGGACAGCTTTATTCAGTTTACAGAGTGCCCTCGGA
Host Sequence
Chromosome
chr3
Cytoband
q27.1
Reference genome
GRCh37/hg19
Start
184459396/184741608 (Hg38)
End
184459396/184741608 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3C
Target gene
LOC107986163
Nearest miRNA
hsa-let-7g/Upstream/500119; hsa-mir-1248/Downstream/511602;
Nearest TSS
ENST00000440867/Upstream/7533; ENST00000609211/Downstream/329;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/29489, chr3-CpG: 48/Downstream/70416
Upstream sequence
CATGCTGAGGAACTTGGGTGCTGAGGAGCCATTAGAAGCTTTGGAGTAGAGAAAATGTGATCAGAGCTGAAACTCTGAAAGCCTTATTAGAGAGTGGGAG
Downstream sequence
AATAGGACTCTGCCTCCTAATGTCCCCGATGCCAGGAAAGTTCTGCAGCCCCACAGTTAGTGGTCTCCTCACTGACAAAGCTCTAGGCTCAGGGAGCAAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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