Basic Information
VIS ID
TVIS42000685
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
76766
Orient
+
Integrated sequence
TCTGTTAAGGCTGTTGACATGAGCATGGAAGACATGGCCGCCCGCCTGGCTCGCCTGGAGTCTGAGAATAAGGCTCTGAAGCAACAGGTCCTCAGAGGGG| |GTGCCTGTGCCTCGTCTACCTCTGTTCCTTCTGCTCCAGTGCCTCCGCCTGAGCCGCTTACAGCTCGACAGCGAGAGGTAATGATTACGCAGGCCACGGG
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
GRCh37/hg19
Start
189161023/189443234 (Hg38)
End
189161023/189443234 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/754368; hsa-mir-3137/Downstream/386688;
Nearest TSS
ENST00000440867/Upstream/133340; ENST00000486398/Downstream/188182;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/495471, chr3-CpG: 99/Downstream/677057
Upstream sequence
CAGATTGTCTTTCAGAGTAGATTTTAGTAGGTGGGGAGGAGAAAGATGGCTGTAAAGTTGGAAGTAAGGAAAAAATATGGAGTAACTAAGAAGGAGGATA
Downstream sequence
TTACATCTCTGAAAGTACATCATCAATCCCCTAAACTCCATGCTTCCTAAAGACCCTAAATAAGATCAGCTATCTGTTCTCAGAAATTTCTCTATAAGCA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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