Basic Information
VIS ID
TVIS42000688
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
146470
Orient
+
Integrated sequence
TTGGTGGGCTGCATAAGGCAGTAGGTTTGAGGTGACCTACTTGGACCATGTGGATCCAGTGTCCTGATCCTGGACCTTGACTATGAAACAATTCTAAAAA| |AATGCATCATAGTCCAGTGTCCAGGGACAGTGCACTCGGAAGTCTCATCATCTCCGTTTGTGTGTTTAGTGTGGCCAGTACGGCCACCCCTGTGCCACGC
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
57094/57201 (Hg38)
End
57094/57201 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZNF595 ; ZNF718
Nearest miRNA
hsa-mir-12113/Downstream/292956;
Nearest TSS
ENST00000502981/Upstream/3872; ENST00000609714/Downstream/67279;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/3423, chr4-CpG: 97/Downstream/50059
Upstream sequence
aaaagccacaattgctttttcaccaacctaaTAGAATAATGTTTTACCAAATATCGGGGTATCATGGGtgtgatggttaatttcatgtatcaacttgact
Downstream sequence
AATACTGTGGCAGAATCTGTAAGTGTAAACAAGCACCTTAGCAGTGGGAAGTCAAGGCCACTAAATATCCAGAGCCATAATGCCAACTATGCCTCCCTGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate