Basic Information
VIS ID
TVIS42000690
Fusion event
EBV-LINC00955 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
147653
Orient
+
Integrated sequence
CTAGTTGTGTGCTTAGCAGCAACGCACACCAGGCTGACTGCCTTAGCAGTGTGGCCCTTTATTGTGGCATCCTAAGGAGGGATTCTGGAGTGCCTTTCGC| |GTGAAGCATGCCCTGAGACGTACTCGAGTTAGGACTTAATCGCTCCTGTGCCGCTGGATGAGGGAGCGCCAATTTGTACATCCTAGCTCTGGCCATAGAG
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
3581831/3580104 (Hg38)
End
3581831/3580104 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC00955
miRNAs that regulate target gene
hsa-mir-675-3p ; hsa-mir-448 ; hsa-mir-190a-3p ; hsa-mir-4666a-5p ; hsa-mir-6867-5p ; hsa-mir-586 ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-5011-5p
Nearest miRNA
hsa-mir-4800/Upstream/1329948; hsa-mir-12113/Downstream/2343171;
Nearest TSS
ENST00000502981/Upstream/35216; ENST00000505702/Downstream/52925;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/14646, chr4-CpG: 66/Downstream/61938
Upstream sequence
GCTAATAAAAAATGCAAAGTTCTTGCCAATAATGTGAGTGTTGAGGCAATGCTCTTCTTTTTCTTTTCTTTTCTTTTTTTAAAGTGCctgacatttatga
Downstream sequence
TATCATATGTGCAAAAAAAGCCTTTGAGGACATAAAATAAATATCACATTAGCACCATGCCGACTTATTCTCccatccatccatccaaccactcacttat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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