Basic Information
VIS ID
TVIS42000692
Fusion event
EBV-KCNIP4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
79398
Orient
+
Integrated sequence
CGTTGGCAAACTTAAGGGTAGCGTGACATCCAGCCCCTGTGCCCTCACTACTGCCGTTATATTGGTAGAATTACAGTTATCCCACTTTATGTATGGCACT| |GTTTCTGGTATCAGGTACACGGGGTTTTGCATTTCTGCATGGTGGCACCACATGGTTCCAAACACATCTTGAAAGTAGACATCTACAGATTCCAGGCTTA
Host Sequence
Chromosome
chr4
Cytoband
p15.31
Reference genome
GRCh37/hg19
Start
21192214/21190591 (Hg38)
End
21192214/21190591 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
KCNIP4
Nearest miRNA
hsa-mir-12113/Upstream/662207; hsa-mir-12115/Downstream/274109;
Nearest TSS
ENST00000502981/Upstream/206550; ENST00000515680/Downstream/113398;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/489878, chr4-CpG: 95/Downstream/757871
Upstream sequence
TAATTATAAGGCTAGACTCAGGAAACAACAAACCAACCAAAAATACACAAACAAAACAAACAATAAGCTAATCACAAATATTATCTTGGCAAGTTGTGTG
Downstream sequence
GATGAATGAAACCCAAAAACCAAACTAGAAAGGTTAGCAAACAGTTATCAACCAACATTCTAAACCCCAATGGCTTTAAAGGTAAGTCTAGGGATGTTGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate