Basic Information
VIS ID
TVIS42000693
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
45213
Orient
+
Integrated sequence
CGGTCAAGGGTGTCCTTGGCGTCCGGGTGGGCCCCGAGGCTCTCGCAGAGTGGGCAGATGGTCCGTGAGGCATTCTTGTGCCTTAGTCCAAACATGGGGG| |CCAGGAGGCAGGGGCCCTGCGAATGGTCGCCAGCCTCCGGTCTGGTGATGGCCAGGGCCAACTCCGCCAGCTCATCGCCGCTGTATTCCGCGTTTAAACC
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
26032054/26030432 (Hg38)
End
26032054/26030432 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/1510142; hsa-mir-1243/Downstream/2789150;
Nearest TSS
ENST00000502981/Upstream/102217; ENST00000637313/Downstream/40322;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1362, chr4-CpG: 20/Downstream/288715
Upstream sequence
GCCTTTGGAACACCAGGTCTCAGCTGCTTTTGGAACACCAGTTCCTTTGGAACACCAGGTCTCAGCTGCTAGATTGAAGATAGGGATCAAGATTCCTTGG
Downstream sequence
gaactttctgcataaccttattttgaatgaccaaagctcagcattgcctgggtgtctcttgggattcctcctgtaacCGAGTTGAATCTGCCCACAATTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate