Basic Information
VIS ID
TVIS42000698
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
107195
Orient
+
Integrated sequence
TGGTCTTTATCGCGGACTGCGTGGCTTTCATCTACTACGCCTGCGGCGAGGTGGCGCTAATCAAGGCCCGAAAAAAGGTCTCGGGTCTTACAGACCTCTC| |GGCCTGGGTCTCGGCAGTGGGCTCCCCAACCGTGCTGTTTTTGGCCATCCTCAAGCTCTGGTCCATACAGGTCTTCATCCAGGTCCTTTCCTACAAGCAC
Host Sequence
Chromosome
chr4
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
66988799/66123081 (Hg38)
End
66988799/66123081 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/5200397; hsa-mir-1243/Downstream/153743;
Nearest TSS
ENST00000502981/Upstream/119800; ENST00000265404/Downstream/1297973;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/452125, chr4-CpG: 37/Downstream/1422194
Nearby gene
LOC110120783(+681) ;
Upstream sequence
agagaaaagggaccacttatagactgctgatgggaatgtaaattagtttagccactgtagaaaccagtttggagatttctcaaagaactcaaaacacaac
Downstream sequence
tttcaaaccatataattatatatataacacatatatTTTTAAAAAACAAGACTGTGTTTGTTACCAGATTCCTTGGTACATCACACAATATTCAATAGCA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate