Basic Information
VIS ID
TVIS42000699
Fusion event
EBV-STAP1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
90053
Orient
+
Integrated sequence
CTGGTGTCCGGGGGATAATGGAGTCAACATCCAGGCTTGGGCACATCTGCTTCAACAGGAGGCGCAGCCTGTCATTTTCAGATGATTTGGCAGCAGCCAC| |CTGCGGACAAAAATCAGGCGTTTAGATGGGGCATTTATGTTTGGGACGCTAGCCGCCTGGGCATTCGTGTTAGTATATACTGACCTCACGGTAGTGCTGC
Host Sequence
Chromosome
chr4
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
68431326/67565608 (Hg38)
End
68431326/67565608 (Hg38)
Orient
+
Location type
Intronic
Target gene
STAP1
Nearest miRNA
hsa-mir-12113/Upstream/1288680; hsa-mir-1243/Downstream/9007960;
Nearest TSS
ENST00000502981/Upstream/6880; ENST00000514109/Downstream/59547;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/19951, chr4-CpG: 45/Downstream/135277
Upstream sequence
GGTAGAACAAATCCAATAATTGGCAGGTAGAACAAATTCAGAAGGCAGGTAGAACAACAAATGCTACCTGGAAATATCCAACTAGCATATTTTTATCTTT
Downstream sequence
aatacttgctatgtcccaggtcttaggtgctttacacacatacattattagtccattcaattattcaacaactctatggagcaatagcaggaggtggtgt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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