Basic Information
VIS ID
TVIS42000701
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
138200
Orient
+
Integrated sequence
CATTGCTAGGAACGCTGCAGGTGAGATTCACTCTAGCACCTGCATGGGCGGTGACATTTTCAAATTTAACCAGATCTGAGAAAAATGCACAAACAGACCC| |CACACAGCAGCACAATAGAAGCACTAAATGAGTCATTCCTAAACTGTCAGTTTTAAAACTCCCTGCTTCTCAGGCCTAAATATGTGGTGGGGTGTGCTTA
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
72542306/71676589 (Hg38)
End
72542306/71676589 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/5399661; hsa-mir-1243/Downstream/4896979;
Nearest TSS
ENST00000502981/Upstream/337536; ENST00000344413/Downstream/77889;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/488837, chr4-CpG: 30/Downstream/355258
Upstream sequence
agtttataaataggagccaaacactggtgacacatgaaaataaatgtggaaacagtagacaccagtaggagagggaagaggtgaaaaactacctatcggg
Downstream sequence
TCCCTCTAGGGTGATCATTTTCTCCTTTTTATTTCCTCTTGACCTCCAGGACATATCCTACATCCCTCATGGAGATGCATACATAATCAAAGACCACCTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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