Basic Information
VIS ID
TVIS42000702
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
149730
Orient
+
Integrated sequence
CGTTTACCGGACACACCTTCCCCGGGAATGTGTGAATACGGGCGTATGACTTTAGAAATGGGGGCGTGTGCTGCGCCAGCAGGTAAGGCAGGCACTCGTC| |CTGGCTGGTGACGGGAGAGCCACTGAGGAAGATCTGGGGCTCGCTGGTGTTTAGCTTGTCCCCGCTCTGGGTGCAGGAGCGTGTCAGCTGAATGTCGCTC
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
75384020/74518303 (Hg38)
End
75384020/74518303 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/8241375; hsa-mir-1243/Downstream/2055265;
Nearest TSS
ENST00000502981/Upstream/69664; ENST00000307428/Downstream/71178;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/72880, chr4-CpG: 49/Downstream/275588
Upstream sequence
gaggcccggactcggacagcccaggatcataactatgctaatttttccctcttcaaagctttgcagcctttggctccagagccatctaatggccccagga
Downstream sequence
GAAATAGTTACATAAATGTTATAGAACAAGCAAAATCAGCCAGAAGATGTCTGAAAAGCTTGCGTTCAGACAATCATCTCTAACTCCAAAACCTGATTTG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate