Basic Information
VIS ID
TVIS42000703
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
51910
Orient
+
Integrated sequence
AGATGGACATCTCTGGCTCGAAAGACTCGGAGTAGCCGTCCAGGTCCTGCAGAAAATTCAGCGAGATGGTCTCCACCAGGGACCGGAAGGGCTCAGAGTG| |CCCGTCGCAGTAGAGGAGGGGAGCAACGACCCTGACCTGTCCCAGGGTCTTCAGGTTAAACAGATATTGAGAGGAGACAAAGAGAGTTAGGGGCCGACCG
Host Sequence
Chromosome
chr4
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
78539925/77618771 (Hg38)
End
78539925/77618771 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1043145; hsa-mir-1243/Downstream/5134566;
Nearest TSS
ENST00000502981/Upstream/12939; ENST00000515625/Downstream/113110;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/460333, chr4-CpG: 161/Downstream/199782
Nearby gene
CXCL13(-6937) ;
Upstream sequence
aggtggagttcaggtgataatatgagcaatggggagcggctgtaaatacagatgaagcttcacttgctggcccgttgcttacctcctactgtgcagccaa
Downstream sequence
TGGAAACAGTCTGGTAACCTCACAGGGCTCTGCAGCCGTTTCAAGGAGGTTCTTTAGCACCCTCTGGTGGCTACTGCCAGAAATACCATGTTCAAATTGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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