VISDB Viral Integration Site DataBase

VIS ID

TVIS42000706

Fusion event

EBV-RAP1GDS1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

83532

Orient

+

Integrated sequence

CTAGAACATTTCCAGATGTTTCGCTTGGATTTTTTGGCCAGTCTTAATTGATTGTCATTGGTTTCAGCAATCGGACCTCCGGCCCCTAGGCAGTTTATTC| |CTTGAGCAAAACCTGAACATCGAAGAATTTATATGGATGTGCATGACCGTGCGTCACAGATGTCAGGCCATCAGAAAAAAACCATTACCAATTGTTAAGC

Chromosome

chr4

Cytoband

q23

Reference genome

Start

End

99259440/98338289 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-3688-5p ; hsa-mir-7847-3p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-6851-5p ; hsa-mir-4470 ; hsa-mir-3689d ; hsa-mir-6134 ; hsa-mir-4797-3p ; hsa-mir-4264 ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-6865-5p ; hsa-mir-6815-5p ; hsa-mir-4796-3p ; hsa-mir-676-5p

Nearest miRNA

hsa-mir-12113/Upstream/11037706; hsa-mir-1243/Downstream/659098;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/76241, chr4-CpG: 97/Downstream/319702

Upstream sequence

TCACAATAAAATCTGGGCCTTGAATATattcagcagatatttaatgagctcctatttggtgccaggcactgttctaggtgccaaagatacagcagtgaag

Downstream sequence

AGGGTAAATTTGATTTTGATTTTGTTAAATTTGAGGTATTTAGCATATACCCAAGTGCAAATGCTTTGTTTTCTGTTGCATAAAAGGAGAGAGGATTGGG