Basic Information
VIS ID
TVIS42000707
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
58361
Orient
-
Integrated sequence
TGCAGGACTATACCTGGCGGCAGGGAATGAGTCGGATGTGAAAGATCGAGAGGGCAGTGGCCTGAGGTTATACGGTATTATTCGCCGTTCAAACGGTAGC| |ATGACGGGAGGGCTGCTATCAGCACCGGGCGTCCCCGCCGCCTCCCCATCACTGGACACAAGCTCGGGCCCCACCAGGTCAAAGCCGCTGCCGTTGGCCT
Host Sequence
Chromosome
chr4
Cytoband
q26
Reference genome
GRCh37/hg19
Start
115374747/114453591 (Hg38)
End
115374747/114453591 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1301229; hsa-mir-1305/Downstream/203168;
Nearest TSS
ENST00000502981/Upstream/473864; ENST00000507710/Downstream/144864;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/473937, chr4-CpG: 122/Downstream/144675
Nearby gene
LOC105377379(+4521) ;
Upstream sequence
aaagtttactatatttactattcacttcttacagagttggtaagaagatgaaatgagatactgtgcgtaaaacccctaaaaacccaataggcatttgaaa
Downstream sequence
taccatttgacacagcaatcccattactgaatgtatacccaaagggatacaaattgttcaaccataaagacacatgcacttgcatgttcattgcagcatt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate