Basic Information
VIS ID
TVIS42000709
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
131681
Orient
+
Integrated sequence
TAATGGCATTTTCATACACATGAGTCCAGTACCGCATCGGTTCAGGGACTACAATGGTCAGGTCCCCAAAGACAGCCTTCAAATGATTCAGCATAGTAGT| |CTTTCCCACACCAGGGGCACCTTCCAAAAATAGGGAACAGGCAGGTTTGATTACTGGTACATGATTTGTTAGGTGGGTCACAATTGGAACCCGCATGCTC
Host Sequence
Chromosome
chr4
Cytoband
q28.1
Reference genome
GRCh37/hg19
Start
127195451/126274296 (Hg38)
End
127195451/126274296 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/766989; hsa-mir-1305/Downstream/17069164;
Nearest TSS
ENST00000502981/Upstream/203588; ENST00000504491/Downstream/803466;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/956521, chr4-CpG: 86/Downstream/1348580
Nearby gene
LOC105377410(+5807) ;
Upstream sequence
gctattgctaccatctcaaaacttagtgactgcaaatagcagcaaacatttatttgcctacagttcagcaattacagcagagttcagtgcagatggctcg
Downstream sequence
TAACTGAAAGAGTGTATCCCTTTAATTGATGTTTGTACCTTTTTTCTAGCAGTTCCAATTTGATGCTCACTTTCAAAAACAGagaaaaatatattagaat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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