Basic Information
VIS ID
TVIS42000710
Fusion event
EBV-LINC02465 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
101494
Orient
+
Integrated sequence
GCTGCCCCTGGTGCATGTCTCTCAGGACCTCAAAGGCGGGGCCAGAGACTCCCGAGTAGAGCCCCCTGGGCTTGGTTCGCCTGAACTCGGCGGCAATGTC| |GGAGAGTACCGGCCAGTATTTGGCCAGGTCCCGCCGCTGGAGTTCCTCTAGGGCGGCGTCCGTAGAGCGACCATGACTGCTGACCCGCTGCGTCATATTT
Host Sequence
Chromosome
chr4
Cytoband
q28.2
Reference genome
GRCh37/hg19
Start
130742494/129821339 (Hg38)
End
130742494/129821339 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02465
Nearest miRNA
hsa-mir-12113/Upstream/4314032; hsa-mir-1305/Downstream/13522121;
Nearest TSS
ENST00000502981/Upstream/32380; ENST00000507099/Downstream/16022;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/727595, chr4-CpG: 27/Downstream/1901853
Upstream sequence
AACTGAAGCTGCAGCTTTTAATCTTTCTAAAGACAATAGGCTAAAGTGAGGTCCTCATAATAAGATGCTAGTCACCAGGAAGGAAGCCAGGGAAAATCTC
Downstream sequence
tactatgttcactatttgggtgacaggttcaactgaagcccaaatgtcagcatcacccaatatatccatgtaacagaccttcacatatatccctgaactg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate