Basic Information
VIS ID
TVIS42000716
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
122117
Orient
+
Integrated sequence
GAGAGGATCTCATCGGTCCTGACCACGGTCATGGCCACCCCTGGGTGGATCTTGAGCTTGGCCTGGGCAATATAGGCCATGGGGGACATCTTGATGTGCA| |TGGCGGTCATTCCACTGATTGAAACGAGGGAAGGAAGACATTCGGCCGCGTATTTGCCCATGGGCGAGCGGTGCCACTCCCGGTACTCTGCAAAGAGCTG
Host Sequence
Chromosome
chr4
Cytoband
q31.22
Reference genome
GRCh37/hg19
Start
148086620/147165468 (Hg38)
End
148086620/147165468 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/756780; hsa-mir-1305/Downstream/179161;
Nearest TSS
ENST00000502981/Upstream/159976; ENST00000514245/Downstream/315449;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/219461, chr4-CpG: 66/Downstream/315578
Upstream sequence
gtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataagagaggacacaaacaaatggaaaaacattccatgctcattcatatgaagaa
Downstream sequence
atagtagctATTGTCATTGTGTTGTATAACAACCAAAAAAAAAAAAAAAAAGTCATCCTAAAGAAGAAAATAAATGTCTTTAGGTACTGTCTTCCAAATT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate