Basic Information
VIS ID
TVIS42000719
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
46809
Orient
-
Integrated sequence
GTTCTCCAGGGGCAGCTCCCAACCCCTCTGCACCGTGAAGCTGCGCCACGGACAGATTTACCACCTGGAGTTTGTCTACAAGTTCCTGGCCTTTAAGCTG| |AAGAACTGCAACTACCCCTCCTCGCCCGTGTTTGTGATATCCAACAACGGCCTGGCCACCACCCTGAGGTGCTTTTTGCACGAGCCGTCGGGTCTCAGAT
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
155660451/154739299 (Hg38)
End
155660451/154739299 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2202783; hsa-mir-1305/Downstream/4389503;
Nearest TSS
ENST00000502981/Upstream/112227; ENST00000510919/Downstream/1539;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/112129, chr4-CpG: 23/Downstream/1227
Nearby gene
LRAT(+1542) ;
Upstream sequence
tgaaaacacttCCAAAAAAAGTGTAGGTGTTATCAGTATATCATACCATGTGAGAGAAGGTGTAAAGCAACAAAAGGAgttttgttttgttttgttttgt
Downstream sequence
CTCCCAGGGGGTAATTGATCCCTATTGGCCTAACACTGCATGTAGCACTGAGTTAGGAGGCTCCATGGAGAAGTGTCTGCTTCTTTTCCTCTGCTGTCAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate