Basic Information
VIS ID
TVIS42000721
Fusion event
EBV-GALNTL6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
108947
Orient
+
Integrated sequence
GGTCGCCGGGTCTAGAGGCGACCGTTTTCGAAAGAAGGCCGTCACAATGTTCACCCGGGGTGAGCAGTCTCTCCCGGGCTTGCCACCCCCACTGTGGCGG| |ACGTAGTCTCCAACAATTTTGTATTGGAGGAGCACCTGGTAGAAGTAGTTGTGCCGTGGATTGATGAAGATGTTGACTGGGACCCGGTCTTTAATACCAA
Host Sequence
Chromosome
chr4
Cytoband
q34.1
Reference genome
GRCh37/hg19
Start
173076965/172155814 (Hg38)
End
173076965/172155814 (Hg38)
Orient
-
Location type
Intronic
Target gene
GALNTL6
miRNAs that regulate target gene
hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6844 ; hsa-mir-9-5p
Nearest miRNA
hsa-mir-12113/Upstream/969522; hsa-mir-1305/Downstream/1112346;
Nearest TSS
ENST00000502981/Upstream/103369; ENST00000457021/Downstream/110340;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/341847, chr4-CpG: 154/Downstream/1012978
Upstream sequence
acccagaccagttcccctacatagacgcttggttacagctggttttagacgcccccctacagtggttgagagaacagcagcataagtggctgacagaggc
Downstream sequence
GAATTCTGACCACACTACTCCATTTTCTAACCTTTCTTACTTTCCATTCTCCTTTTGCTCTTATCTAGTAGTAAGCTTTTTAAATGAAATAGCAAGCCCC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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