Basic Information
VIS ID
TVIS42000722
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
38279
Orient
+
Integrated sequence
GCATGGCGAAGTAGACAGGTTACTTTTAGAGTGTAGTGTACAGGGCCGGGCGCAACAGTGCCACCAACCCGGGGTCTGAGCATTCCATGGGCAGCAGGGA| |CACTGCACTACCGCCAGGTCCTGGGGCAGCCGGGGTTCCTGGCGCTCCGGGGGCAGCCGGGCGGCCGCCGGTGGGTCCGCTGGGCCGCTGCCCCGCTCCG
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
190057590/189136436 (Hg38)
End
190057590/189136436 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4197996;
Nearest TSS
ENST00000502981/Upstream/134361; ENST00000514966/Downstream/56664;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/339169, chr4-CpG: 157/Downstream/170970
Upstream sequence
tgtgtaggtcattctctgtaggtgtcaaaacaggctgaaggatttactcgggaggtgacatttaagttgggttttggggaggagtaaggggtttaaggta
Downstream sequence
GTTACATGTCTGTCTAAGAGCATAGGAGAAACAAATTTAAGTGGACATTGGTACATGGATGAAGGAATACAATATTACAGTTCAGTCACTTTAAAAATTA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate