Basic Information
VIS ID
TVIS42000723
Fusion event
EBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
83444
Orient
-
Integrated sequence
AGCCTAGATTTGTGGATGTGAACCCAACGCAGGCTCCAGTGATCCAACTAGTCCACGCTGTCTATGATTCCATGTTGGTAAGAGGCACCTAGAACATTTC| |CAGATGTTTCGCTTGGATTTTTTGGCCAGTCTTAATTGATTGTCATTGGTTTCAGCAATCGGACCTCCGGCCCCTAGGCAGTTTATTCCTTGAGCAAAAC
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
190487176/189566022 (Hg38)
End
190487176/189566022 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4627582;
Nearest TSS
ENST00000502981/Upstream/274686; ENST00000513681/Downstream/93583;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/201642, chr4-CpG: 133/Downstream/79373
Upstream sequence
TATCTTACAAAGATCTAGAATTTATTACAAAGTAATTAAAATCAATAACAACAACAAGAAAACAAACTTCCAAAAGGTCAAAACTTTAACCAATCTACAT
Downstream sequence
AATAACCCCTATTTAGGGCTGATCCTCAAGACAGTGAGAGGTGCACTGTGCAAGTTTGAAGGCACATTAATTTTATCAGTGTTCACTCAGCATTTTACTG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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