VISDB Viral Integration Site DataBase

VIS ID

TVIS42000724

Fusion event

EBV-NKD2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

47480

Orient

+

Integrated sequence

AGGCGGCGCCGTGGAAGAAGGAACTCGTGAGGCACCCCATCCGCAGGCACCGGACACGCGAGACTCGCCGTATGCGCGGGAGCCATTCACGGGTGGAACA| |CGTGCCCCCCGAGACCCGGGAGACGGTGGTGGGGGGAGCATGGCGTTATTCTTGGCGCGCCACACCTTATCTGGCACGGGTGCTGGCTGTCACGGCCGTG

Chromosome

chr5

Cytoband

p15.33

Reference genome

Start

End

1017655/1017540 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-7843-3p ; hsa-mir-127-5p ; hsa-mir-7106-5p ; hsa-mir-766-5p ; hsa-mir-3928-3p ; hsa-mir-4786-3p ; hsa-mir-4635 ; hsa-mir-1247-3p ; hsa-mir-5587-3p ; hsa-mir-197-3p ; hsa-mir-6809-5p ; hsa-mir-548al ; hsa-mir-4445-3p ; hsa-mir-4780 ; hsa-mir-130b-3p

Nearest miRNA

hsa-mir-10397/Downstream/45356;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/7616, chr5-CpG: 23/Downstream/7675

Upstream sequence

cattcttcaggggtttctcactctcatgctagtccataattaccctcaagaaaattgttcaaaattattatttagatgttcttaccagtttatggctcca

Downstream sequence

CAGGACCTGCACCTCTGTTTGTCACAGGCTTGTCCTGGGCACCGCCTCAAAAGGAGGAAACAAAAACAGAAGGGCTGAGTCCCGGAGCCAGGACCCCAAA