Basic Information
VIS ID
TVIS42000725
Fusion event
EBV-NDUFS6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
152720
Orient
-
Integrated sequence
GGGGGCCATGGTGGAGAGCATCTTGCTGGTCAGAGCCAGACTGGGTGGTGTCTGCAGCAAAAGAGGAACTTGCCCAGGCAGTCAGTTATTTTGCATGCCA| |CCTCCCTGCCTGGTGGACTTCCAGACTATTTTCTGCATTCGCCCTTGCGTGTCCATTGTTGCAAGGAGCGATTTGGAGAAAATAAACTGTGAGTTTCACA
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1814495/1814381 (Hg38)
End
1814495/1814381 (Hg38)
Orient
+
Location type
Intronic
Target gene
NDUFS6
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-27b-3p
Nearest miRNA
hsa-mir-4277/Upstream/105513; hsa-mir-10397/Downstream/5013472;
Nearest TSS
ENST00000502646/Upstream/12960; ENST00000503386/Downstream/36569;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/12590, chr5-CpG: 17/Downstream/36847
Upstream sequence
TGGAGTTACTGAATCAAATGGATGGATTTGATACTCTGCGCAGAGTTAAAATACAACAGACCAAATACACGGGATCTTGCTTTGCTGCATCCAGGAAGAT
Downstream sequence
TGAGCGAGGTGGAGACTCGGGTGATAGCGTGCGATGGCGGCGGGGGAGCTCTTGGCCACCCAAAAGTGTATATAAACTTGGTGCGTAGCTGGCCACCTGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate