Basic Information
VIS ID
TVIS42000730
Fusion event
EBV-SLC45A2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
66500
Orient
+
Integrated sequence
GATGCCGCCTCGTCCCATGGAACCGGCGCAGGTTGCGGGGCCGGTTGACATCATGAGCAAGGGCCCAGGGGAGGGACCAGGTGGGTGGTGTGTGCCCGGG| |GGATTGGAAGTGTGCTATAAGTACCGTCAGCTCTTCTCAGAGGATGATCTGTTGGAGACTGACGGTTTTACTGAACGAGCCTGTGAATCTTGCCAATAAA
Host Sequence
Chromosome
chr5
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
33972447/33972342 (Hg38)
End
33972447/33972342 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
SLC45A2
Nearest miRNA
hsa-mir-10397/Upstream/1577867; hsa-mir-103a-1/Downstream/2175550;
Nearest TSS
ENST00000502646/Upstream/35956; ENST00000607051/Downstream/11895;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/34138, chr5-CpG: 60/Downstream/35349
Upstream sequence
CCTCAAGTGTATCCAGGGAAGTCCAATTTTATTTTTCCCACCCCTTCATCATATGTTTCCCACAATATTtttccctttctctctttttctctctcttcct
Downstream sequence
TAGATAGAAAAAAATACATATTGATTTGCCAAATGAACGAGCAAGATTAGACACGTTGAAAATCCATGCAAGTCCCCTTACAAAGTATGGTGAAATTAAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate