Basic Information
VIS ID
TVIS42000732
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
133264
Orient
+
Integrated sequence
ACTGCCCAGGGACACAGGCCCCGAACTCATGTGGGCCCCAAGCCTTCGCAACTCACTGCGCGTGTCCCCCGAAGCGCTCGAGCTGGCAGAGCGGGAGGCC| |GAAAGGGCCAGGTCGGAGCGGTGGGACAGGTGTGCCCAGGTGCTCAAAAATAGGCTGCTCCGCGTGGAGCTGGACGGCATCATGCGTGACCACCTGGCCA
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
GRCh37/hg19
Start
42921114/42921012 (Hg38)
End
42921114/42921012 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/4363451; hsa-mir-103a-1/Downstream/11030492;
Nearest TSS
ENST00000502646/Upstream/33620; ENST00000506791/Downstream/86531;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/496067, chr5-CpG: 47/Downstream/3100
Nearby gene
PRELID3BP6(-2845) ;
Upstream sequence
aatgggtcaaaaaagaaatagaatgcaaaatcaaaaaatatcttgagacaaatgaaaatgaaaatacaacatacctatgggatgcacattcttacatttg
Downstream sequence
aaagattattctgtttttggttgagtttatgatcttataaccttcatgtaaaattctagcatgttcaaatatttagcaaaggcaaatataaaactcatct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate