Basic Information
VIS ID
TVIS42000736
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
145967
Orient
+
Integrated sequence
TCTAAAGAGTTACCCAATTATAACAAAACTGTTGTAGGGTAACGAAGACCTGATGGAAGTGGTATTGTTGCCGTTGAAAGACGGGTGTCCTGGCTCAAGT| |TCGCACTTCCTATACAGTGTTAAAGCCTTGTATCGGAAGTTTGGGCTTCGTCCCAGTGTACTCGATAATGTCGACTGCTGCGAAAGGTTTGGACCGTCTT
Host Sequence
Chromosome
chr5
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
57544551/58248724 (Hg38)
End
57544551/58248724 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5H
Nearest miRNA
hsa-mir-10397/Upstream/2739798; hsa-mir-103a-1/Downstream/281319;
Nearest TSS
ENST00000502646/Upstream/126383; ENST00000513924/Downstream/206392;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1074030, chr5-CpG: 157/Downstream/210783
Upstream sequence
acaacccaaaaccaaaaccaaaacaacaacaacaacaaaaacaaaaacaaaaatccatgatgagatacactatacaacttttagaatggctaaaagcttt
Downstream sequence
ggccttatgtcctgtattgatactgttccctctgcctatcctgtctgcctggctatttcctatgtgccctttaagtcttatctaagGCTAAATATCCTGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate