VISDB Viral Integration Site DataBase

VIS ID

TVIS42000738

Fusion event

EBV-TRAPPC13 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

128168

Orient

+

Integrated sequence

GCGACAGGTGCCCAAGCTGGGCAATGCCCCCGCCGCGCAGGTCAGCAACGTGCTCATCGCCAACCGCTCCCACAACTCTCTAAGGCTGGTGCCCAATCCG| |GACTTGCTGCCTCTCCAGCATTTGTACCTCAAGCACGTAGTGCTAAAGAGTCTGAATCTGGAGAATATAGTGCAGGACTTTGAGGCCATCTTCACCTCCC

Chromosome

chr5

Cytoband

q12.3

Reference genome

Start

End

64959493/65663666 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-92a-3p ; hsa-mir-1273e ; hsa-mir-3653-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-6844 ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-138-2-3p ; hsa-mir-153-5p

Nearest miRNA

hsa-mir-10397/Upstream/5959963; hsa-mir-103a-1/Downstream/6505801;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/39205, chr5-CpG: 90/Downstream/58110

Upstream sequence

gaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcccgccactgcactccagcctgggcgacagagcgagactccgtctca

Downstream sequence

TTTTTTTAACTTATTTAAGCTGAACTGGTGATATCTATTATAAGCAGAAGTAGTCTTTTCTTGGTAAATAATCCAGTTAGCAAACCTGAATAGTATTTAT