Basic Information
VIS ID
TVIS42000739
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
66379
Orient
+
Integrated sequence
AGACTATCATGTACTATTGTCGCATTGAGAAGGCCGCCGATCTGGGGGTGATGGAGTGTAAGGCCAGCGCGGCTCTGTCGGTGCCGCGGGAGGAACAGAA| |TGAGCGGAGTCCCGCTGAGCAGATGCCGCCTCGTCCCATGGAACCGGCGCAGGTTGCGGGGCCGGTTGACATCATGAGCAAGGGCCCAGGGGAGGGACCA
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
66514226/67218398 (Hg38)
End
66514226/67218398 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/7514695; hsa-mir-103a-1/Downstream/4951069;
Nearest TSS
ENST00000502646/Upstream/21599; ENST00000515077/Downstream/49624;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/54631, chr5-CpG: 159/Downstream/996646
Upstream sequence
aatcagttgaccatttttatgtgggtctatctctgggctttctattctatcccattgttctatctgtctattacttagccaataccacatcatcttcatt
Downstream sequence
GGGAGTGACCTCTGTAGTTGAAACAGTCCAAGCCCAAAGAATAGATGATCTTTGCAATTAAAGATTTTTGAAAGGGGAAAAAAGAACATGATCTGGCAAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate