VISDB Viral Integration Site DataBase

VIS ID

TVIS42000740

Fusion event

EBV-BDP1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

134920

Orient

-

Integrated sequence

CCCGGTGGCCCCAAGCTGAGCCAGTTCCTCGCACTGGAGTGGGTCATTGGCAAAAAGGTAAATAAACTCATCGCACGGGGGTTTTGCCTCCTTCTCGTCT| |CTTGTTTCGGGTAGGGGAGTAAGGCCGTGCCAGGCCGCCATGCTCAGGGCCACGGCGTGCCAGAGGCCCTCGTAGTCGTGCGCATCCGAGAGGATGGCAC

Chromosome

chr5

Cytoband

q13.2

Reference genome

Start

End

70801962/71506135 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30b-5p ; hsa-mir-186-5p ; hsa-mir-3120-5p ; hsa-mir-4495 ; hsa-mir-4698 ; hsa-mir-4743-3p ; hsa-mir-6888-3p ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-944 ; hsa-mir-4511 ; hsa-mir-3133 ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-6074 ; hsa-mir-4793-5p ; hsa-mir-205-5p ; hsa-mir-5196-3p ; hsa-mir-3614-3p ; hsa-mir-3646 ; hsa-mir-4652-3p ; hsa-mir-8063 ; hsa-mir-4674 ; hsa-mir-7156-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4437 ; hsa-mir-378g ; hsa-mir-1184 ; hsa-mir-1304-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-6890-3p ; hsa-mir-4714-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6740-3p ; hsa-mir-3182 ; hsa-mir-4778-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-1182 ; hsa-mir-4524b-3p ; hsa-mir-193a-5p ; hsa-mir-4764-3p ; hsa-mir-2681-3p ; hsa-mir-150-5p

Nearest miRNA

hsa-mir-10397/Upstream/11802432; hsa-mir-103a-1/Downstream/663332;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/50075, chr5-CpG: 49/Downstream/80974

Upstream sequence

aaaatagcaatatgctaattgtagaatctgagagataggtatacgtgtgttcattgtacgttatttctttaaatttgtctatattttttaaacattttat

Downstream sequence

TCAGTTTAAACTAGAGTCTATTAATAGATACTGTGGCTTGGTAGAAAATTAAACTTTTCTGAATGGCCTCTGGGTTTTAGAACACTGGTGGACACTGTAA