Basic Information
VIS ID
TVIS42000743
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
169110
Orient
-
Integrated sequence
TTCCATCCTCAGGGCAGTGTGTCAGGAGCAAGGCAGTTGAGGAAAGAAGGGGGCAGAGCAGTGTGAGAGGCTTATGTAGGGCGGCTACGTCAGAGTAACG| |CGTGTTTCTTGGGATGTAGGCCCGGGGGGATTTGCGGGGTCTGCCGGAGGCAGTACGGGTACAGATTTCCCGAAAGCGGCGGTGTGTGTGTGCATGTAAG
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
91481069/92185252 (Hg38)
End
91481069/92185252 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/2168532; hsa-mir-103a-1/Downstream/1435444;
Nearest TSS
ENST00000502646/Upstream/102655; ENST00000511323/Downstream/14285;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/804139, chr5-CpG: 183/Downstream/1385281
Upstream sequence
tgagtgagaacatgcaatatttgtctttctgtgcctggcttatttcacttaatgtcctccagtttcatctgtgttgttgcaaatgacaagatttcattct
Downstream sequence
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTAATAATAATAAAGTCTATTATCACAAAAATTCAATAAGCACTGACAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate