Basic Information
VIS ID
TVIS42000745
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
109145
Orient
+
Integrated sequence
AATGCGCCCCGCATTTTCGCTTGGGTCCGTCATTACGTAGAGCATAGACTCCACCCCCCTGTTGGCAGCTAGGCTGTCTGCCACCAGGTCATGACCGGGG| |CCCAGTTTGCGCTTACGGACATCTTTAAGATTCCAGGCCTCATCCTGCGTCAACAGATAGTCACCCTCCGAGGGCAACCGCCCATCCGGGACGTACTCCA
Host Sequence
Chromosome
chr5
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
102064532/102728828 (Hg38)
End
102064532/102728828 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/1912263; hsa-mir-103a-1/Downstream/7785001;
Nearest TSS
ENST00000502646/Upstream/57269; ENST00000506127/Downstream/25153;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/229792, chr5-CpG: 77/Downstream/25907
Nearby gene
LOC105379104(-2000) ;
Upstream sequence
CACACTAGAATTTCACTTGATGGGCTGTATTCTGAAAACTCATCATTGTAGTGGAACATGTTCCTTGTTCTGGTGATTAGTGTAGGTTAGAATGAAGATT
Downstream sequence
aataaggtattgggaaGCAGGGAGATGAATGTAGATTTGACAGCTTTAAAATAGAGATGTTGCCATTCTTGAAAAAAAAATCAGCTTTTAGCCAGGTGAC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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