Basic Information
VIS ID
TVIS42000748
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
78770
Orient
+
Integrated sequence
CCGTGCCAAGACCCGAGACAGTAATGTCAAATGTCCGATTGCTCGCAAATGCACCAGAAATATTTTCACAACCCGAAGGTGTCCCCGAGGTGAGAGTCCA| |TTTGCACTTAAAGTCAGTTTCAGTGTTGTTTGGCCAGGCCCAAAAGGCAGTCACTGTAACATTTGGCGAGTTTGCGTCCTCAGAAGTGACCATTGGCACT
Host Sequence
Chromosome
chr5
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
110554190/111218492 (Hg38)
End
110554190/111218492 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/704577; hsa-mir-103a-1/Downstream/5037251;
Nearest TSS
ENST00000502646/Upstream/121485; ENST00000504090/Downstream/5161;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/125920, chr5-CpG: 89/Downstream/5379
Nearby gene
CAMK4(+5161) ;
Upstream sequence
TTAAGTACTTCAGGGTGCTCTGAGAGTGTATGGCGGGGACCCAGCtctgaaatgagacccaaaggatgattaagagtttgtcaggaggaaacagAATACA
Downstream sequence
ttttatggctgaataatatttccttgtgtatacatactacattttctttatccattcatccactgatggatactcaggttgattctttatcatggctgct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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