Basic Information
VIS ID
TVIS42000750
Fusion event
EBV-CHSY3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
151905
Orient
+
Integrated sequence
ATGAGCAACAGGGCCAAACAGGCGGCGGGGCCTGGGTAGTAGCGGGCAACGAGAGACTCTGTGCAATCAAACCCCAGGCTCCCGGCCTCACCCAGGAAGA| |GCAGCGGCAGGGACAGCATAAACCAGGAGAAGGCGCAAATGAGTCCGGTGAAGGTGACGTTGCATATCAGGCGCGGCTTCCTTCCGAATTTTGTGCGCAA
Host Sequence
Chromosome
chr5
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
129265276/129929583 (Hg38)
End
129265276/129929583 (Hg38)
Orient
+
Location type
Intronic
Target gene
CHSY3
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-484
Nearest miRNA
hsa-mir-10397/Upstream/532436; hsa-mir-103a-1/Downstream/2288266;
Nearest TSS
ENST00000502646/Upstream/21496; ENST00000507584/Downstream/1233044;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/23664, chr5-CpG: 27/Downstream/1065495
Upstream sequence
TTATGCTATTACGTTCTAACCAAAtgtaaaaagggatgaataatttttatataatgctatagaatgagcttcagggaatattagtaaaaagtgaacaaac
Downstream sequence
TCTCATTTACTGCTCAAAAATATATACACATAGTGGAAATTTCTCAGGAATAGTTAAATAGCAAAAATAAAAAAAAACCACAAACTAGCTACAACTTTGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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