Basic Information
VIS ID
TVIS42000751
Fusion event
EBV-CDKL3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
54427
Orient
+
Integrated sequence
ACTCGCTCACGATGGCCGTCAGGGCAGCCTCGGCTGCTCGTCTTTTTTCCAGAAGCCCGGCCAGCCCCCGCTCGTACTCCGCGTAGGGGGCCTCCAGATC| |CGTGTTGACCACCGCTGATTTCATGTCCGGGGACTGCAGGGCCTGGCGCGTCTGCGCGAGGGCCGAACGGATGGCATCGGCCGCCGTCCTGGCGCGAAAG
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
133595258/134259567 (Hg38)
End
133595258/134259567 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5C
Target gene
CDKL3
Nearest miRNA
hsa-mir-10397/Upstream/33715; hsa-mir-103a-1/Downstream/1543418;
Nearest TSS
ENST00000502646/Upstream/33157; ENST00000504431/Downstream/44855;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/32777, chr5-CpG: 26/Downstream/107371
Upstream sequence
taattcatgtggtactcattattcctatctttcagatgcagaaaccatggctgactggagttaagtgacttatccaccatatcatacaCcctgaggggga
Downstream sequence
tgcctaggagttacaggccgcaatgagctgtaagcatgccactgcactccagcctgggtgacaaagtgagaccctgtctctaaataaaaatttaaaaata
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate