Basic Information
VIS ID
TVIS42000752
Fusion event
EBV-SPOCK1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
74900
Orient
+
Integrated sequence
TTGCTAAGAAATGAGCAGACGATGGGCTCACTGAGACAGGTTTATTTGCTCGCTGTTCAAGCCAATAGCATCACGGATCACCTGAAGCGCTTTGACGCCG| |TCCGCGTCCCTGAGAGCTGTCGTGGGGTGGTGGAGGCCCAGGTGGCCAAGCTTGAGGCCGTGCGCTCAGTCATCTGGAATACCATGATCTCTCTGGCTGT
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
136733867/137398178 (Hg38)
End
136733867/137398178 (Hg38)
Orient
+
Location type
Intronic
Target gene
SPOCK1
Nearest miRNA
hsa-mir-10397/Upstream/1595103; hsa-mir-103a-1/Downstream/249394;
Nearest TSS
ENST00000502646/Upstream/32717; ENST00000604680/Downstream/100416;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1040824, chr5-CpG: 134/Downstream/100149
Upstream sequence
tccacagggagggaacttggagaataaataccccaagctcgtgctccaagttgtctctactccttccctttcttttcctgccagtgccaaacccaattgg
Downstream sequence
CTGAGCATCTGCAAACCTTAGTGAGGAAGCCTCATTAGCTGATGGGTTGCAATGAGGTGGCACCATGACAATAATTTGTGACTTTGAAATAATTGGTGCC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate