Basic Information
VIS ID
TVIS42000753
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
91765
Orient
+
Integrated sequence
TTTAACGGGAGGAAGAAAGGTGGGCTTTGAGGGGTGGGGGAATATGGGTCTCTCATCGCTCTCTTGGTGGACCGCTGCTATCCAAGGCTGTTCAGGTTCC| |GCCGCGTTGGAAGGACATGGAGTTTGACCACGGTTGGGCCTGGATGTCCGGCGCGACTTTGGGGCCCGCAGGCGCGGGGCCTCGGCCCTGGCCTCTTCCC
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
137880025/138544336 (Hg38)
End
137880025/138544336 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/896687; hsa-mir-103a-1/Downstream/2019335;
Nearest TSS
ENST00000502646/Upstream/1036; ENST00000521941/Downstream/13555;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/600, chr5-CpG: 67/Downstream/30908
Nearby gene
ETF1(-1036) ;
Upstream sequence
GATAACTGGAGAAAAGCATCTCGGGATAATTTTACCATAGACAACATTTGGAGGTGGAATAAAGTAGAGTGTGTTTTGAGGCCCTGGATAGCTTAGAGGG
Downstream sequence
GTTGAgaactacagaaacgccagtgtgctggcacaaggtcagggacggggagagtggtttgagggagcagcaggggaagaggtcatgtagggtcttttaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate