VISDB Viral Integration Site DataBase

VIS ID

TVIS42000754

Fusion event

EBV-chr5 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

167334

Orient

+

Integrated sequence

GGTGTGGCTTGGGCTGAATCCAAATGTGTATTGGCACAAGATGGAAAGCAAAGTTGCTGGAGTTACTGGGTGGGAGACAGGGATGTATGTGGTCCCCCGC| |TGGTATGCCAGTACCCTGTGGAAGTAAGGGGCCTCATCTGCCTGGTAGTTGTGTTGTGCAGAGGTCTGATGTGTGTAGGAGGGGTGGGTTCAACGCAGGG

Chromosome

chr5

Cytoband

q33.1

Reference genome

Start

End

150803666/151424105 (Hg38)

Orient

-

Location type

Intronic

Target gene

LOC105378234 ; SLC36A1

miRNAs that regulate target gene

hsa-mir-18a-5p ; hsa-mir-500a-5p ; hsa-mir-1228-5p ; hsa-mir-203b-3p ; hsa-mir-3147 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-6825-5p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-381-5p ; hsa-mir-767-5p ; hsa-mir-571 ; hsa-mir-219a-1-3p ; hsa-mir-4530 ; hsa-mir-922 ; hsa-mir-1226-3p ; hsa-mir-4259 ; hsa-mir-634 ; hsa-mir-6507-5p ; hsa-mir-3671 ; hsa-mir-5704 ; hsa-mir-6872-3p ; hsa-mir-4756-3p ; hsa-mir-1295b-3p ; hsa-mir-15a-3p ; hsa-mir-4717-5p ; hsa-mir-3941 ; hsa-mir-6767-3p ; hsa-mir-4719 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485

Nearest miRNA

hsa-mir-10397/Upstream/1691215; hsa-mir-103a-1/Downstream/97982;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/171003, chr5-CpG: 35/Downstream/23436

Upstream sequence

ggatccatattaggggatttgcagagggaaggagagtagtatggattaaagttaaatttaaaaacaataattgagaagactgtgtttgaatgtgaaggat

Downstream sequence

GCGGGGCTGCCTATGCCACCCTCCCTCTCAACCACTCTGCAGAAACAGCCTCTCATTGCCTGGGTGTGGAGAGTGGAGAGTCTGGCAATAAAAGTACATT