Basic Information
VIS ID
TVIS42000755
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
47054
Orient
+
Integrated sequence
TACCAAAGAACTCCATCATTATGCTGGGCCAGGATGACTTCATTAAGTTCAAAAGCCCCCTGGTCTTCCCTGCTGAGCTTGATCTCCTGAAATCTATGGT| |GGTCTGCCGGGCCTACATCACGGAACACCGGACGACGATGCAGTTTCTGGTGTTTCAGGCCGCCAACGCCCAGAAGGCCTCGCGGGTCATGGATATGATT
Host Sequence
Chromosome
chr5
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
151083182/151703621 (Hg38)
End
151083182/151703621 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/181473; hsa-mir-103a-1/Downstream/2643485;
Nearest TSS
ENST00000502646/Upstream/16456; ENST00000518182/Downstream/21735;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/171681, chr5-CpG: 40/Downstream/54810
Nearby gene
RN7SKP232(+668) ;
Upstream sequence
gttttgatttgcatttctctaatgatcagtcatgttgagctttctttcatgatttttggccacatgtatatcttcttttgagaagtgtctgtttatgtct
Downstream sequence
cattaaaaacaaagtgcagagcaatgtttagactgcaagagagagaaaaataaaaacatgcacatgtgcatttgctcacatacccaaaaagaagcaactg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate