Basic Information
VIS ID
TVIS42000758
Fusion event
EBV-ATP10B integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
46984
Orient
-
Integrated sequence
TTGCACGAGCCGTCGGGTCTCAGATCGGGCCAGAGCGGCCCTTGCCTGGGTCTCTCAACGGATGTTGACCTACCAAAGAACTCCATCATTATGCTGGGCC| |AGGATGACTTCATTAAGTTCAAAAGCCCCCTGGTCTTCCCTGCTGAGCTTGATCTCCTGAAATCTATGGTGGTCTGCCGGGCCTACATCACGGAACACCG
Host Sequence
Chromosome
chr5
Cytoband
q34
Reference genome
GRCh37/hg19
Start
160313453/160886446 (Hg38)
End
160313453/160886446 (Hg38)
Orient
+
Location type
Intronic
Target gene
ATP10B
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p
Nearest miRNA
hsa-mir-10397/Upstream/400996; hsa-mir-103a-1/Downstream/7279399;
Nearest TSS
ENST00000502646/Upstream/34232; ENST00000518888/Downstream/52180;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/464340, chr5-CpG: 68/Downstream/661240
Upstream sequence
ggggtgatggtagtggtgatggtggtgggggtgatggtgatagtggtgatgtggtagtgatggtagtgatttgatggtaataatggtggtggtggtgatg
Downstream sequence
GCTATGTGTGTGTTTGTATTGGTGAGGGGAAGTAACAGGGAAATAATCAAGAAGTTAAAGCCCATCTGGGCACAGATTTCACAGAGCCTTAAAAACCCGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate