Basic Information
VIS ID
TVIS42000759
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
109756
Orient
+
Integrated sequence
GCAGCTTGGAAGAGGAAATTATGCCATTTCGCAATATGTCCCACATCAGGTTCTCAGACTGCCCCCTGGTCATGGACTCCACGTACGAGCAGAGAACAGT| |CCTCTGCTCGTCGGTGGCCTCCTGTAGCCCCCAGTAAATGGATTTCAGGGAGGGACCGTCCTTGCTGTCATTCTCTTGGACTAACGAGGAGACAAAGTCA
Host Sequence
Chromosome
chr5
Cytoband
q34
Reference genome
GRCh37/hg19
Start
161480284/162053278 (Hg38)
End
161480284/162053278 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/1567828; hsa-mir-103a-1/Downstream/6112567;
Nearest TSS
ENST00000502646/Upstream/16507; ENST00000639549/Downstream/8301;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/504900, chr5-CpG: 26/Downstream/1384100
Upstream sequence
aaaaccggacgagtcttacaggttagttcaggatctgaaccttatcaaccaaattgtcttgcctatccaccccgtggtgccaaacccatatactctccta
Downstream sequence
gaaggaaagagttatcaaagatgactccaggtttatgccttgaTTTGCTAGTTAATATTATATGAGCAATCATCTGCCTTGAAACTGGCTGAGGTCCCAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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