Basic Information
VIS ID
TVIS42000760
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
111406
Orient
+
Integrated sequence
GCAGCCATATTCACATCCATGTTCCTCAAATGGCTCGAGGGCCTGTCGCAGCTCGTCTCTGGCCTCAAGCTCCTGCTCACGGAGCTCCTCCACCCGCTCT| |AGCTGCTTGTAGTTGATTTTTGGAAATTGAGTCTTGGTCGCGGTGACCACCCTCTGATAGGTAGAAATTAGCTGTTTGGACTCAAACGTCTCCCTTGCGT
Host Sequence
Chromosome
chr6
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
33937835/33970058 (Hg38)
End
33937835/33970058 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6H
Nearest miRNA
hsa-mir-1236/Upstream/70858; hsa-mir-10398/Downstream/29914;
Nearest TSS
ENST00000381078/Upstream/58956; ENST00000478214/Downstream/86265;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/180829, chr6-CpG: 21/Downstream/58103
Upstream sequence
actatttctagtctcctcttgtcccacacccatgaagataagctgtcaatttacatttgtctgggtgagggaggcaccctgtggagacatgtggacttct
Downstream sequence
catgtatattagaaaaaaagaaaggtcttatcaatccaagttccatcttgagaaactacaaaagtagaaaaaaataaaagagcaaaatgggccaggcacg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate