Basic Information
VIS ID
TVIS42000761
Fusion event
EBV-FOXP4-AS1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
1936
Orient
+
Integrated sequence
GGAGGAAAGGCTATATGAGCTACTCTCTGACCCACGCTCCGCGCTCGGCCTAGACCCGGGGCCCCTGATTGCTGAGAACCTGCTGCTAGTGGCGCTGCGT| |GGCACCAACAACGATCCCAGGCCTCAGCGTCAGGAGAGGGCCAGAGAACTGGCCCTCGTTGGCATTCTACTAGGAAACGGCGAGCAGGGTGAACACTTGG
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
41503095/41535357 (Hg38)
End
41503095/41535357 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
FOXP4-AS1
Nearest miRNA
hsa-mir-1236/Upstream/2460976; hsa-mir-10398/Downstream/63366;
Nearest TSS
ENST00000381078/Upstream/16984; ENST00000451305/Downstream/10717;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/29804, chr6-CpG: 189/Downstream/11115
Upstream sequence
ttctaaggtacacaattaatattttatatactgctaagaaagaaaaaagtcactgccaattaagtaatgacacatcatcaaatgctaaatacatctcaat
Downstream sequence
gcatcatattctcaattttgcctcatagcctgtagaggttaaaataCAGCAAAATTTGCTggtctttgcctccactgcccaactctgccccggtcacaca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate