Basic Information
VIS ID
TVIS42000763
Fusion event
EBV-SUPT3H integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
103562
Orient
+
Integrated sequence
AGACACGATCTCTATATTATTGGGCCCCTTCACCTATCTGGTGGCAGAGCTTTCACCGGTGGAACTCGTGACAGATGTCTACGCCACCCTAGGCATCGTG| |GAGATCATCGACGAGCTCTACCGGAGCAGTCGCCTGGCCATCTACATCGAGGACCTCGGTCGAAAATACTGCCCCGCGAGCGCGACCGGGGGAGATCATG
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
44850449/44882712 (Hg38)
End
44850449/44882712 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
SUPT3H
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-15b-5p
Nearest miRNA
hsa-mir-10398/Upstream/446990; hsa-mir-10524/Downstream/314962;
Nearest TSS
ENST00000381078/Upstream/357453; ENST00000483243/Downstream/72798;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/155046, chr6-CpG: 91/Downstream/494809
Upstream sequence
acatacatgtgttatgtaaaaaagtgaaactcacagaaacacagagtagtatggtggcggctagagggtaagggaaatggggagatgctggccaatgggc
Downstream sequence
atgcaaggctgattcaacttatgcaaatcaataaacgtaatccatcacataaacagaaccaatgacaaaaaccaaatgatcatctcaatagatgcagaaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate