VISDB Viral Integration Site DataBase

VIS ID

TVIS42000764

Fusion event

EBV-TDRD6 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

35567

Orient

-

Integrated sequence

CCAAGCCACTACGGCCACGTCCCCGGCCTCCCGCTCGGGTAAGTGCTTTTTCATTTTTAGCCCCAGCCCCTCCTCTATAAGTTCTAGGCAAACCTCCAAT| |CACCAGCCACCTTCCAATGTAGTCTCTTAGAGAGTGGCTGCTACGCATTAGAGACCACTTTGAGCCACCCACAGTAACCACCCAGCGCCAATCTGTCTAC

Chromosome

chr6

Cytoband

p12.3

Reference genome

Start

End

46661813/46694076 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6867-3p ; hsa-mir-155-5p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-138-1-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-5088-3p ; hsa-mir-3183 ; hsa-mir-6800-3p

Nearest miRNA

hsa-mir-10398/Upstream/1496306; hsa-mir-10524/Downstream/5450273;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/5075, chr6-CpG: 60/Downstream/40923

Upstream sequence

ATACTGCAAAAGCTGGGGATGATTCTAAAGAACAAGAAGTTCAAATGGTGCTACAGAGCCTCCTGGGAACAAAAAGAACCACAGGACACCTGGGAGTTCC

Downstream sequence

AAACAGGGATGCCATTTCGGCATTGATGCCTTTGTTCTCTGAGGAAGAAAGCAGTGATGGAAGCAAGCACAATAATGGTTTACCAGATCATATCTCAGGT