Basic Information
VIS ID
TVIS42000765
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
93624
Orient
+
Integrated sequence
TCTGGACTGTGGCCCTCTGCAAGTTTCGCAGATGCATTTACTATAACTACATTCAGGGATCTATAGCCACCATCTCCCAGCTTCTGCACCTCGAGATCAA| |GGCCCTCTGCAGCTGGATAATATCCCAGGATGGCATGCGCCTCTTTCAACACAGCAGGCCTCTCCTCACCCTCTGGGAGAGCGTGGCCGCAAATCAGGAG
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
50282493/50314780 (Hg38)
End
50282493/50314780 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/5117010; hsa-mir-10524/Downstream/1829569;
Nearest TSS
ENST00000381078/Upstream/221069; ENST00000426547/Downstream/199255;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/763307, chr6-CpG: 57/Downstream/399841
Upstream sequence
ATAATACATTCCTAGGTCTGAAAAAAAAACAGAAATTTTCCTCAGTGTTTATATATTTGAATTTTTGGCCAATCTTTGCCTCTCTTTCAAAAACTTATTT
Downstream sequence
ACCAAATACCACTTGGGTTTAGGCCTGGCCTGGGAAAGTCTGTTTTCTTCTTTTAATCTCATGGCTTTACAACAAGCCCCTAATGCCTGAAGGTAAACTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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