Basic Information
VIS ID
TVIS42000768
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
36185
Orient
+
Integrated sequence
CTCCACCCGCAGTAACCCAGCACTGGCGTGTGACGTGGTGTAAAGTTTTGCCTGAACCTGTGGTTGGGCAGGTACATGCCAACAACCTTCTAAGCACCCG| |CGCTTGTGTTTTGCTTTATCTGCCGCCATCATGCCTACATTCTATCTTGCGTTACATGGGGGACAAACATATCATCTAATTGTTGACACGGATAGTCTTG
Host Sequence
Chromosome
chr6
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
58731764/58405486 (Hg38)
End
58731764/58405486 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/1015274; hsa-mir-10524/Downstream/12971474;
Nearest TSS
ENST00000381078/Upstream/367020; ENST00000622616/Downstream/2317662;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/443936, chr6-CpG: 45/Downstream/3880464
Upstream sequence
GCATAGgccgggcacagtggctcacacttgtgatcccagaactttgggaggctgaggcaagaaaatggcttgaacccaggaggcggaaattgcagtgagc
Downstream sequence
tccttctactttttacgtgaagatattttcttttttaccatagggctcaatgcactcccaaatatccctttgcagattctacaaaagcagtgtttacaaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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