Basic Information
VIS ID
TVIS42000771
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
126658
Orient
+
Integrated sequence
GTTCACCGTCAGTCTATTCTTTACGGACGGGGTGGGGGCCAACCTAGCCATCAATGTCAATATCAGTGGCACCTATCTGAGCTTCCTATTGGCCATGACG| |TCACTGCGGTGCTTCCTGCCTGTGGAGGCTATTTATCCCGCGGCCGTGTCAAACTGGAACTCGACTCTAGATCTCCATGGGCTGGAAAATCAGAGCCTAG
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
63442930/62733025 (Hg38)
End
63442930/62733025 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/5342813; hsa-mir-10524/Downstream/8643935;
Nearest TSS
ENST00000381078/Upstream/446798; ENST00000370659/Downstream/478421;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/446702, chr6-CpG: 163/Downstream/839221
Upstream sequence
TACAATCCAGAGTTGGCTTGCAGTGTTATCaggttggtgcaaaagtaattggggttttgtcattacttttaatggcaaaaaccacaattacttttgcagc
Downstream sequence
AATATAAATTGTAAATTTTCAAACATACTTAGACCTAGAAAGTAGGAAGCTTTGAATTTATTTTTTATTCCACTTTTCAAATTGATGGTGCATTTAGCCA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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