Basic Information
VIS ID
TVIS42000772
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
105371
Orient
+
Integrated sequence
AAAGCCCAGGATGAACTCGTCTGCATAAGCCCAGGTCAGTCCTAGGTCAGCGGCCGCGTGTAGGAGAACCCGGGTGACGGCGGTGTAGAGGCCCCCGAGT| |GCCCGTCGCGTGTCTGAGGTGCCATAGCGGTGAAGGGCCCGCAGCCAGGTTTGCGCGTCCCGCGCCTGCCCTCCGCCATCAGGCGTTCCCACGGGGGCGC
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
63960624/63250719 (Hg38)
End
63960624/63250719 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/5860507; hsa-mir-10524/Downstream/8126241;
Nearest TSS
ENST00000381078/Upstream/39273; ENST00000639568/Downstream/69224;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/964396, chr6-CpG: 163/Downstream/321527
Upstream sequence
CCCAGTCATGCTCGGGAGGGAGTAAGGAGCGGGTTTCACCACGCTGTGATGCTGAGCCTTGACTTGCCTGTTCTAGGTTTCATGAGCTACATCGTGGAGC
Downstream sequence
TGCACTTAATATTAAAAAGATCAGTTGAAATTTGCAGTTTCTTTCTATTGTTTTATATCATAGCATAATTTCTGTGTTGGTATTGAatgtacatatatat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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