Basic Information
VIS ID
TVIS42000773
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
149636
Orient
+
Integrated sequence
AGGGTCATGCCCACCTTGACGTTCAGCGGGCCCTCTCGTTTCAGGTCCGGCGTGTCCACGGAGACTCGGACGTAGCCCTTACCGCGGCGTATGGCGTTTA| |CCGGACACACCTTCCCCGGGAATGTGTGAATACGGGCGTATGACTTTAGAAATGGGGGCGTGTGCTGCGCCAGCAGGTAAGGCAGGCACTCGTCCTGGCT
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
GRCh37/hg19
Start
71753095/71043392 (Hg38)
End
71753095/71043392 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA6D
Nearest miRNA
hsa-mir-10398/Upstream/13653180; hsa-mir-10524/Downstream/333568;
Nearest TSS
ENST00000381078/Upstream/86354; ENST00000467503/Downstream/245411;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/85963, chr6-CpG: 115/Downstream/245011
Upstream sequence
tagggtgctcacttaatactgtgacaatgggaattaaatttcagcataagttttgaagtgatctaacattcaaatgacaacaACCTACTAACCTCAATAC
Downstream sequence
gcagccccaaaagactaaTGTGAACCTCTAAACTCCATTCTTTAAAATTCAGCTTGAAATTAAAAACATAGATACATACAGATATAATATTATCTTATTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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